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*[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/04-SequenceAnalysis_I.pdf 04 - Sequence Analysis I <small>(pdf, 8.6 MB)</small>] | *[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/04-SequenceAnalysis_I.pdf 04 - Sequence Analysis I <small>(pdf, 8.6 MB)</small>] | ||
*[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/05-SequenceAnalysis_II.pdf 05 - Sequence Analysis II <small>(pdf, 3.1 MB)</small>] | *[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/05-SequenceAnalysis_II.pdf 05 - Sequence Analysis II <small>(pdf, 3.1 MB)</small>] | ||
| − | * 06 - | + | *[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/06-InterpretingProteinStructure.pdf 06 - Interpreting Protein Structure <small>(pdf, 6.6 MB)</small>] |
| − | * 07 - | + | *[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/07-StructuralDomains.pdf 07 - Structural Domains <small>(pdf, 5.8 MB)</small>] |
* 08 - Genome Sequencing | * 08 - Genome Sequencing | ||
* 09 - Genome Structure and Analysis | * 09 - Genome Structure and Analysis | ||
| − | * 10 - Homology I: Principles | + | *[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/10-Homology_I_Principles.pdf 10 - Homology I: Principles <small>(pdf, 2.4 MB)</small>] |
* 11 - ''Homology II: Alignment '' | * 11 - ''Homology II: Alignment '' | ||
* 12 - ''Homology III: BLAST '' | * 12 - ''Homology III: BLAST '' | ||
| Line 53: | Line 53: | ||
;Lecture recordings | ;Lecture recordings | ||
| − | * Thursday, 15. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/02-SequenceData_2011.mp4 Lecture 02 (Sequence data) <small>(mp4, 16.4 MB)</small>] | + | *Thursday, 15. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/02-SequenceData_2011.mp4 Lecture 02 (Sequence data) <small>(mp4, 16.4 MB)</small>] |
| − | * Monday, 19. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/03-Structure-Data_2011.mp4 Lecture 03 (Sequence data ''cont.''; Structure Data) <small>(mp4, 17.2 MB)</small>] | + | *Monday, 19. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/03-Structure-Data_2011.mp4 Lecture 03 (Sequence data ''cont.''; Structure Data) <small>(mp4, 17.2 MB)</small>] |
| − | * Thursday, 22. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/04-StructureData-SequenceAnalysis_I_2011.mp4 Lecture 04 (Structure data ''cont.''; Sequence Analysis I) <small>(mp4, 16.9 MB)</small>] | + | *Thursday, 22. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/04-StructureData-SequenceAnalysis_I_2011.mp4 Lecture 04 (Structure data ''cont.''; Sequence Analysis I) <small>(mp4, 16.9 MB)</small>] |
| − | * Monday, 26. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/05-SequenceAnalysis_I-II_2011.mp4 Lecture 05 Sequence Analysis I ''cont.'' & II <small>(mp4, 15.3 MB)</small>] | + | *Monday, 26. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/05-SequenceAnalysis_I-II_2011.mp4 Lecture 05 Sequence Analysis I ''cont.'' & II <small>(mp4, 15.3 MB)</small>] |
| − | * Thursday, 29. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/06-SequenceAnalysis_II-StructureAnalysis_2011.mp4 Lecture 06 Sequence Analysis II ''cont.'' & Analysis of structure <small>(mp4, | + | *Thursday, 29. September 2011: [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/06-SequenceAnalysis_II-StructureAnalysis_2011.mp4 Lecture 06 Sequence Analysis II ''cont.'' & Analysis of structure <small>(mp4, 15.6 MB)</small>] |
| − | * Monday, 3. October 2011: | + | *Monday, 3. October 2011:[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/2011-10-03_Topic-06b.mp4 Lecture 07 Analysis of Structure (cont.) <small>(mp4, 18.3 MB)</small>] |
| − | * Thursday, 6. October 2011: | + | *Thursday, 6. October 2011:[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/2011-10-06_Topic-07.mp4 Protein Structural Domains <small>(mp4, 16.3 MB)</small>] |
| − | * Thursday, 13. October 2011: (Parkinson) | + | *Thursday, 13. October 2011: (Parkinson) |
| − | * Monday, 17. October 2011: (Parkinson) | + | *Monday, 17. October 2011: (Parkinson) |
| − | * Thursday, 20. October 2011: | + | *Thursday, 20. October 2011:[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/2011-10-20_Topic-10.mp4 Lecture 10 Homology I: Principles <small>(mp4, 19.4 MB)</small>] |
| − | * ''Monday, 24. October 2011: '' | + | *''Monday, 24. October 2011: '' |
| − | * ''Thursday, 27. October 2011: '' | + | *''Thursday, 27. October 2011: '' |
| − | * ''Monday, 31. October 2011: '' | + | *''Monday, 31. October 2011: '' |
| − | * ''Thursday, 3. November 2011: '' | + | *''Thursday, 3. November 2011: '' |
| − | * ''Thursday, 10. November 2011: '' | + | *''Thursday, 10. November 2011: '' |
| − | * ''Monday, 14. November 2011: '' | + | *''Monday, 14. November 2011: '' |
| − | * ''Thursday, 17. November 2011: (Parkinson) '' | + | *''Thursday, 17. November 2011: (Parkinson) '' |
| − | * ''Monday, 21. November 2011: (Parkinson) '' | + | *''Monday, 21. November 2011: (Parkinson) '' |
| − | * ''Thursday, 24. November 2011: '' | + | *''Thursday, 24. November 2011: '' |
| − | * ''Monday, 28. November 2011: '' | + | *''Monday, 28. November 2011: '' |
| − | * ''Thursday, 1. December 2011: '' | + | *''Thursday, 1. December 2011: '' |
| − | * ''Monday, 6. December 2011: '' | + | *''Monday, 6. December 2011: '' |
Revision as of 23:18, 20 October 2011
BCH441 - Bioinformatics
Welcome to the BCH441 Course Wiki.
This is our main tool to coordinate information, activities and projects in University of Toronto's bioinformatics course BCH441. If you are not one of our students, you can still browse this site, however only users with a login account can edit or contribute or edit material. If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the Wikipedia article on bioinformatics, or visit Wikiomics. Contact boris.steipe(at)utoronto.ca with any questions you may have.
The Course
While the server is undergoing disaster recovery, please do not use pages on this Wiki other than this one and the pages that are linked from here. Data on other pages may be arbitrarily outdated.
Contact Boris Steipe for all matters of urgency. September 28. 2011
Assignments
Assignment 2 has been posted.
Due Monday, Oct. 24.
Temporary links for material
- Lecture slides
- 01 - Introduction to the course (pdf, 6.1 MB)
- 02 - Sequence Data (pdf, 4.6 MB)
- 03 - Structure Data (pdf, 13.6 MB)
- 04 - Sequence Analysis I (pdf, 8.6 MB)
- 05 - Sequence Analysis II (pdf, 3.1 MB)
- 06 - Interpreting Protein Structure (pdf, 6.6 MB)
- 07 - Structural Domains (pdf, 5.8 MB)
- 08 - Genome Sequencing
- 09 - Genome Structure and Analysis
- 10 - Homology I: Principles (pdf, 2.4 MB)
- 11 - Homology II: Alignment
- 12 - Homology III: BLAST
- 13 - Homology IV: Multiple Alignment
- 14 - Structure Prediction I: Homology Modeling
- 15 - Phylogenetic Analysis I
- 16 - Phylogenetic Analysis II
- 17 - Comparative Genomics
- 18 - Computational Systems Biology
- 19 - Structure Prediction II: ab initio Prediction
- 20 - Statistics and Exploratory Data Analysis
- 21 - Gene regulation
- 22 - Metabolic Pathways
- Lecture recordings
- Thursday, 15. September 2011: Lecture 02 (Sequence data) (mp4, 16.4 MB)
- Monday, 19. September 2011: Lecture 03 (Sequence data cont.; Structure Data) (mp4, 17.2 MB)
- Thursday, 22. September 2011: Lecture 04 (Structure data cont.; Sequence Analysis I) (mp4, 16.9 MB)
- Monday, 26. September 2011: Lecture 05 Sequence Analysis I cont. & II (mp4, 15.3 MB)
- Thursday, 29. September 2011: Lecture 06 Sequence Analysis II cont. & Analysis of structure (mp4, 15.6 MB)
- Monday, 3. October 2011:Lecture 07 Analysis of Structure (cont.) (mp4, 18.3 MB)
- Thursday, 6. October 2011:Protein Structural Domains (mp4, 16.3 MB)
- Thursday, 13. October 2011: (Parkinson)
- Monday, 17. October 2011: (Parkinson)
- Thursday, 20. October 2011:Lecture 10 Homology I: Principles (mp4, 19.4 MB)
- Monday, 24. October 2011:
- Thursday, 27. October 2011:
- Monday, 31. October 2011:
- Thursday, 3. November 2011:
- Thursday, 10. November 2011:
- Monday, 14. November 2011:
- Thursday, 17. November 2011: (Parkinson)
- Monday, 21. November 2011: (Parkinson)
- Thursday, 24. November 2011:
- Monday, 28. November 2011:
- Thursday, 1. December 2011:
- Monday, 6. December 2011:
