Difference between revisions of "Homology modeling fallback data"
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==SwissModel response== | ==SwissModel response== | ||
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| + | Explanation of the output is found [http://swissmodel.expasy.org/workspace/index.php?func=special_help '''in the SwissModel Help page''']. | ||
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| + | [[Image:Modelled_range.png|frame|none|Graphical comparison of template and target sequence to emphasize which regions have been modelled.]] | ||
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| − | The | + | The target-template alignment: |
TARGET 1 HVMRRRE DNWINATHIL KAAGFDKPAR | TARGET 1 HVMRRRE DNWINATHIL KAAGFDKPAR | ||
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1mb1_ - | 1mb1_ - | ||
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| − | [[Image:Anolea_output.png|frame|none|Anolea output]] | + | [[Image:Anolea_output.png|frame|none|'''Anolea''' non-local-environment graphical output]] |
| − | [[Image:Gromos_output.png|frame|none| | + | [[Image:Gromos_output.png|frame|none|'''Gromos''' forcefield graphical output]] |
| − | [[Image:Verify_3D_output.png|frame|none| | + | [[Image:Verify_3D_output.png|frame|none|'''Verify3D''' 3D-profile output]] |
==Model coordinates== | ==Model coordinates== | ||
* [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/2007/MBP1_CHAGL.txt MBP1_CHAGL.pdb] | * [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/2007/MBP1_CHAGL.txt MBP1_CHAGL.pdb] | ||
Revision as of 18:43, 1 November 2007
Please remember: if you use information from this page as a fallback for technical problems with the assignment, you must document this in your submission. State what you tried, what didn't work and only then use the data from here.
Contents
Target sequence
>MBP1_CHAGL XP_001224558:33..108 HVMRRREDNWINATHILKAAGFDKPARTRILERDVQKDVHEKIQGGYGKY QGTWIPLEQGRALAQRNNIYDRLRPIF
FASTA formatted target-template alignment
>1MB1 sequence from coordinates 3..100 NQIYSARYSGVDVYEFIHSTGSIMKRKKDDWVNATHILKAANFAKAKRTR ILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLF >MBP1_CHAGL XP_001224558:33..108 ---------------------HVMRRREDNWINATHILKAAGFDKPARTR ILERDVQKDVHEKIQGGYGKYQGTWIPLEQGRALAQRNNIYDRLRPIF
SwissModel response
Explanation of the output is found in the SwissModel Help page.
Graphical comparison of template and target sequence to emphasize which regions have been modelled.
Icon of the model
The target-template alignment:
TARGET 1 HVMRRRE DNWINATHIL KAAGFDKPAR
1mb1_ 3 nqiysarysg vdvyefihst g--simkrkk ddwvnathil kaanfakakr
TARGET ssshhhh hh hhhh
1mb1_ sssssss ssssssss s ssssss ssshhhh hh hhhh
TARGET 28 TRILERDVQK DVHEKIQGGY GKYQGTWIPL EQGRALAQRN NIYDRLRPIF
1mb1_ 51 trilekevlk ethekvqggf gkyqgtwvpl niakqlaekf svydqlkplf
TARGET hhhhhhhhh sss ssss h hhhhhhhhh hh hhh
1mb1_ hhhhh sss ssss h hhhhhhhhh hh hh
TARGET
1mb1_ -
Anolea non-local-environment graphical output
Gromos forcefield graphical output
Verify3D 3D-profile output
