Difference between revisions of "Assignment 5 fallback data"

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Line 8: Line 8:
  
  
−
==Target sequence==
+
==PHYLIP input data: Mbp1 orthologues==
  
−
  >MBP1_CHAGL XP_001224558:8..108
+
  16  55
−
  AGIYSATYSGIPVYEYQFGPDMKEHVMRRREDNWINATHILKAAGFDKPARTRILERDV
+
MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK
−
  QKDVHEKIQGGYGKYQGTWIPLEQGRALAQRNNIYDRLRPIF
+
MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS
 +
MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE
 +
MBP1_KLULAKDFIHPTGKFPKAKTQRHHTALNNVTPLIILKDTVFKDDQFYDLVKMRKLNQIID
 +
MBP1_CANALTPFVTSEGKFPKAKIQRGNTIRNNNTPLMLLKESVLLNKKCIQMERTKLVDEISK
 +
MBP1_DEBHATPFVTLEGKFPKAKVQHGNTIKNNRTPLMLLFDSILLNKKCITYFKVENKENIKE
 +
MBP1_YARLITPFQCKNVGFDKPQVQSGHTATNMFTPLTILQDTLFGAKKVSMYFKLDLVDDVVE
 +
MBP1_SCHPOVECFIKGVDFDKPQASSGHTSCNRLTPLMLLQSTIYGAMDCVQVRQMKDTLYIRK
 +
MBP1_USTMATPCIINNVGLDKPQIETEHTAVNSNTALMSFTDPSLRSKRLVRANRLELVDKFVA
 +
MBP1_ASPNITPFKIGTDGFDKPAVSAGNTALSIHTPLVLLLDTISGVFRLVQAHGLAAVKELAQ
 +
MBP1_ASPTETPFKIEGDGFDKPAVSAGNTALSVHTPLVLLLDTVSGAFRLVSSYGAAAVKELAQ
 +
MBP1_CRYNEVPAMIRGIGVHKSAISMGHSAGNYATPLILLSPSIRGNKGLVVSYGSEVLEDKIR
 +
MBP1_GIBZESDMEVNNIGVDKGKESRSHTAVNGSTALMVLGGTIEGNRSIIATEASKMVSALKG
 +
MBP1_NEUCRTGMEVNNVNIDKGRENRSHTAVNACTALMLLGCTLDGNRSIITLHSTQAVAALQA
 +
  MBP1_MAGGRVEFEVNGVGVEKGKEQRCHTAVNTSTPLMILGNTMEGNRSIITLHSQQSVVALKG
 +
  MBP1_ASPFUVSMEVNGVGVVKARERKRNNALNGATALQVLAPTIDRSV-LVSLHATEILAEVDR
  
−
==CLUSTALW formatted alignment==
+
==PHYLIP distance matrix: Mbp1 orthologues==
  
−
  CLUSTAL alignment
+
    16
−
   
+
MBP1_SACCE  0.000000  0.340197  0.641436  0.698015  1.217853  1.575914
−
  1MB1            NQIYSARYSGVDVYEFIHSTG---SIMKRKKDDWVNATHILKAANFAKAKRTRILEKEV
+
  1.679015  1.734556  2.205033  2.021848  2.012439  2.665819  1.676493
−
  MBP1_CHAGL      AGIYSATYSGIPVYEYQFGPDMKEHVMRRREDNWINATHILKAAGFDKPARTRILERDV
+
  1.594736  1.572812  1.998416
−
   
+
MBP1_CANGL  0.340197  0.000000  0.573520  0.606792  1.101098  1.571271
−
  1MB1            LKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLF
+
  1.788034  2.092392  1.858878  2.098264  2.010324  2.531040  1.531216
−
  MBP1_CHAGL      QKDVHEKIQGGYGKYQGTWIPLEQGRALAQRNNIYDRLRPIF
+
  1.410911  1.432764  2.300807
 +
MBP1_EREGO  0.641436  0.573520  0.000000  0.537044  1.273771  1.429173
 +
  1.510184  1.805609  1.780957  1.919228  1.961973  2.827827  1.791314
 +
  2.121850  1.882121  2.853653
 +
MBP1_KLULA  0.698015  0.606792  0.537044  0.000000  1.191955  1.453182
 +
  1.674717  2.266314  2.264786  2.478006  2.696935  3.451189  2.487955
 +
  2.758670 2.041124  2.617325
 +
  MBP1_CANAL  1.217853  1.101098  1.273771  1.191955  0.000000  0.540067
 +
  1.525822  1.826937  1.371732 1.702409  1.765129  1.921376  1.853606
 +
  2.028292 1.834001  2.184056
 +
  MBP1_DEBHA  1.575914  1.571271  1.429173  1.453182  0.540067  0.000000
 +
  1.366472 2.111250  1.907877  2.038152  1.842951  2.041502  2.818372
 +
  2.349724  1.893817  3.091846
 +
MBP1_YARLI  1.679015  1.788034  1.510184  1.674717  1.525822  1.366472
 +
  0.000000  1.458949  1.099978  1.258665  1.245131  1.791822  1.892723
 +
  1.798693  1.546586  2.470074
 +
MBP1_SCHPO  1.734556  2.092392  1.805609  2.266314  1.826937  2.111250
 +
  1.458949  0.000000  1.965611  1.650181  1.760901  1.882590  1.829431
 +
  1.798599  1.652280  2.232678
 +
MBP1_USTMA  2.205033  1.858878  1.780957  2.264786  1.371732  1.907877
 +
  1.099978  1.965611  0.000000  1.361737  1.543623  1.598177  1.516216
 +
  1.508336  1.687661  1.953468
 +
MBP1_ASPNI  2.021848  2.098264  1.919228  2.478006  1.702409  2.038152
 +
  1.258665  1.650181  1.361737  0.000000  0.183195  1.506196  2.082772
 +
  1.858936  1.901732  2.043755
 +
MBP1_ASPTE  2.012439  2.010324  1.961973  2.696935  1.765129  1.842951
 +
  1.245131  1.760901  1.543623  0.183195  0.000000  1.320001  1.972475
 +
  1.766234  1.810925  1.734993
 +
MBP1_CRYNE  2.665819  2.531040  2.827827  3.451189  1.921376  2.041502
 +
  1.791822  1.882590  1.598177  1.506196  1.320001  0.000000  1.606068
 +
  1.876348  1.696345  1.378680
 +
MBP1_GIBZE  1.676493  1.531216  1.791314  2.487955  1.853606  2.818372
 +
  1.892723  1.829431  1.516216  2.082772  1.972475  1.606068  0.000000
 +
  0.497095  0.523613  1.052197
 +
MBP1_NEUCR  1.594736  1.410911  2.121850  2.758670  2.028292  2.349724
 +
  1.798693  1.798599  1.508336  1.858936  1.766234  1.876348  0.497095
 +
  0.000000  0.488870  1.020647
 +
MBP1_MAGGR  1.572812  1.432764  1.882121  2.041124  1.834001  1.893817
 +
  1.546586  1.652280  1.687661  1.901732  1.810925  1.696345  0.523613
 +
  0.488870  0.000000  1.108262
 +
MBP1_ASPFU  1.998416  2.300807  2.853653  2.617325  2.184056  3.091846
 +
  2.470074  2.232678  1.953468  2.043755  1.734993  1.378680  1.052197
 +
  1.020647  1.108262 0.000000
  
  
−
==SwissModel response==
+
==PHYLIP input data: Mbp1 APSES domains==
  
−
Four e-mails are sent by SwissModel after submission of the modeling request. Two of the received files are ''welcome'' and ''help'' messages. Two other e-mail messages conatin the program output and the model.
+
16  84
 +
MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG
 +
MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG
 +
MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG
 +
MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG
 +
MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG
 +
MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG
 +
MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG
 +
MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG
 +
MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS--
 +
MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G
 +
MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G
 +
MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS
 +
MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD
 +
MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE
 +
MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD
 +
MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN
  
−
:*[[Assignment_5_SwissModel_Results| SwissModel '''Program Output''']]
+
==PHYLIP distance matrix: Mbp1 APSES domains==
−
:*[[Assignment_5_SwissModel_Model| SwissModel attached '''Model Coordinates''']]
 
  
 +
    16
 +
MBP1_SACCE  0.000000  0.170047  0.205399  0.247219  0.487569  0.524603
 +
  0.579198  0.798266  0.690172  0.527376  0.544473  0.657178  0.895524
 +
  0.862050  0.905898  0.907783
 +
MBP1_CANGL  0.170047  0.000000  0.279198  0.319549  0.559059  0.573474
 +
  0.519177  0.789154  0.733572  0.615596  0.625874  0.665870  0.899041
 +
  0.880370  0.935112  0.883959
 +
MBP1_EREGO  0.205399  0.279198  0.000000  0.182532  0.544175  0.510304
 +
  0.585979  0.846715  0.738784  0.557436  0.539410  0.674472  0.880525
 +
  0.873348  0.850046  0.864623
 +
MBP1_KLULA  0.247219  0.319549  0.182532  0.000000  0.467085  0.453277
 +
  0.638363  0.813078  0.772358  0.567769  0.575968  0.690719  0.852917
 +
  0.882337  0.830886  0.904034
 +
MBP1_CANAL  0.487569  0.559059  0.544175  0.467085  0.000000  0.120290
 +
  0.589271  0.686670  0.799405  0.647996  0.639552  0.681593  0.746085
 +
  0.792284  0.817362  0.869237
 +
MBP1_DEBHA  0.524603  0.573474  0.510304  0.453277  0.120290  0.000000
 +
  0.555420  0.667709  0.800353  0.592738  0.583278  0.641173  0.744716
 +
  0.811525  0.809515  0.839041
 +
MBP1_YARLI  0.579198  0.519177  0.585979  0.638363  0.589271  0.555420
 +
  0.000000  0.473875  0.462053  0.388599  0.421408  0.503568  0.581799
 +
  0.593335  0.676734  0.691392
 +
MBP1_SCHPO  0.798266  0.789154  0.846715  0.813078  0.686670  0.667709
 +
  0.473875  0.000000  0.532761  0.545135  0.573415  0.643554  0.593169
 +
  0.603559  0.762385  0.624657
 +
MBP1_USTMA  0.690172  0.733572  0.738784  0.772358  0.799405  0.800353
 +
  0.462053  0.532761  0.000000  0.346127  0.383120  0.560953  0.597524
 +
  0.682290  0.675589  0.672514
 +
MBP1_ASPNI  0.527376  0.615596  0.557436  0.567769  0.647996  0.592738
 +
  0.388599  0.545135  0.346127  0.000000  0.064477  0.503545  0.673114
 +
  0.778854  0.845557  0.762898
 +
MBP1_ASPTE  0.544473  0.625874  0.539410  0.575968  0.639552  0.583278
 +
  0.421408  0.573415  0.383120  0.064477  0.000000  0.534114  0.699665
 +
  0.812899  0.847328  0.802412
 +
MBP1_CRYNE  0.657178  0.665870  0.674472  0.690719  0.681593  0.641173
 +
  0.503568  0.643554  0.560953  0.503545  0.534114  0.000000  0.650085
 +
  0.653523  0.713330  0.695510
 +
MBP1_GIBZE  0.895524  0.899041  0.880525  0.852917  0.746085  0.744716
 +
  0.581799  0.593169  0.597524  0.673114  0.699665  0.650085  0.000000
 +
  0.227631  0.185991  0.289073
 +
MBP1_NEUCR  0.862050  0.880370  0.873348  0.882337  0.792284  0.811525
 +
  0.593335  0.603559  0.682290  0.778854  0.812899  0.653523  0.227631
 +
  0.000000  0.330632  0.480412
 +
MBP1_MAGGR  0.905898  0.935112  0.850046  0.830886  0.817362  0.809515
 +
  0.676734  0.762385  0.675589  0.845557  0.847328  0.713330  0.185991
 +
  0.330632  0.000000  0.316199
 +
MBP1_ASPFU  0.907783  0.883959  0.864623  0.904034  0.869237  0.839041
 +
  0.691392  0.624657  0.672514  0.762898  0.802412  0.695510  0.289073
 +
  0.480412  0.316199  0.000000
  
−
==LGA superposition==
+
[end]
−
 
 
−
The resulting output produced by the LGA server for the 1DUX_ABC and 1MB1 superposition consists of two parts: the superposition report explains which residues were matched and what their RMSD after superposition was. The coordinates contain the rotated coordinates of the entire 1DUX file superimposed on 1MB1. In order to use this for as RasMol, the following manual edits were performed.
 
−
:#LGA created several <code>END  </code> records in the middle of the file. These prevent the following lines to be read in. They were simply deleted. Since the protein chans of the Mbp1 and Elk-1 domains are closely superimposed, RasMol tries to draw multiple bonds between  the residues that have close contacts. This was addressed by bracketing the chains in <code>MODEL</code> and <code>ENDMDEL</code>, which prevents bonds between being drawn.
 
−
 
 
−
:*[[Assignment_5_LGA_Results| '''LGA superposition report''']]
 
−
:*[[Assignment_5_1DUX_1MB1| '''1DUX_1MB1 Coordinates''']]
 
−
 
 
−
==Protein-DNA complex model==
 
−
 
 
−
The DNA coordinates (chain A and B) from the LGA superimposed coordinate file were copied, and pasted into the SwissModel coordinate file, thus generating a homology model of a Protein / DNA complex.
 
−
 
 
−
:*[[Assignment_5_Model_DNA| '''Model/DNA complex Coordinates''']]
 

Revision as of 04:41, 31 October 2007

 

Please remember: if you use information from this page as a fallback for technical problems with the assignment, you must document this in your submission. State what you tried, what didn't work and only then use the data from here.

   


PHYLIP input data: Mbp1 orthologues

16  55 
MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK
MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS
MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE
MBP1_KLULAKDFIHPTGKFPKAKTQRHHTALNNVTPLIILKDTVFKDDQFYDLVKMRKLNQIID
MBP1_CANALTPFVTSEGKFPKAKIQRGNTIRNNNTPLMLLKESVLLNKKCIQMERTKLVDEISK
MBP1_DEBHATPFVTLEGKFPKAKVQHGNTIKNNRTPLMLLFDSILLNKKCITYFKVENKENIKE
MBP1_YARLITPFQCKNVGFDKPQVQSGHTATNMFTPLTILQDTLFGAKKVSMYFKLDLVDDVVE
MBP1_SCHPOVECFIKGVDFDKPQASSGHTSCNRLTPLMLLQSTIYGAMDCVQVRQMKDTLYIRK
MBP1_USTMATPCIINNVGLDKPQIETEHTAVNSNTALMSFTDPSLRSKRLVRANRLELVDKFVA
MBP1_ASPNITPFKIGTDGFDKPAVSAGNTALSIHTPLVLLLDTISGVFRLVQAHGLAAVKELAQ
MBP1_ASPTETPFKIEGDGFDKPAVSAGNTALSVHTPLVLLLDTVSGAFRLVSSYGAAAVKELAQ
MBP1_CRYNEVPAMIRGIGVHKSAISMGHSAGNYATPLILLSPSIRGNKGLVVSYGSEVLEDKIR
MBP1_GIBZESDMEVNNIGVDKGKESRSHTAVNGSTALMVLGGTIEGNRSIIATEASKMVSALKG
MBP1_NEUCRTGMEVNNVNIDKGRENRSHTAVNACTALMLLGCTLDGNRSIITLHSTQAVAALQA
MBP1_MAGGRVEFEVNGVGVEKGKEQRCHTAVNTSTPLMILGNTMEGNRSIITLHSQQSVVALKG
MBP1_ASPFUVSMEVNGVGVVKARERKRNNALNGATALQVLAPTIDRSV-LVSLHATEILAEVDR

PHYLIP distance matrix: Mbp1 orthologues

   16
MBP1_SACCE  0.000000  0.340197  0.641436  0.698015  1.217853  1.575914
  1.679015  1.734556  2.205033  2.021848  2.012439  2.665819  1.676493
  1.594736  1.572812  1.998416
MBP1_CANGL  0.340197  0.000000  0.573520  0.606792  1.101098  1.571271
  1.788034  2.092392  1.858878  2.098264  2.010324  2.531040  1.531216
  1.410911  1.432764  2.300807
MBP1_EREGO  0.641436  0.573520  0.000000  0.537044  1.273771  1.429173
  1.510184  1.805609  1.780957  1.919228  1.961973  2.827827  1.791314
  2.121850  1.882121  2.853653
MBP1_KLULA  0.698015  0.606792  0.537044  0.000000  1.191955  1.453182
  1.674717  2.266314  2.264786  2.478006  2.696935  3.451189  2.487955
  2.758670  2.041124  2.617325
MBP1_CANAL  1.217853  1.101098  1.273771  1.191955  0.000000  0.540067
  1.525822  1.826937  1.371732  1.702409  1.765129  1.921376  1.853606
  2.028292  1.834001  2.184056
MBP1_DEBHA  1.575914  1.571271  1.429173  1.453182  0.540067  0.000000
  1.366472  2.111250  1.907877  2.038152  1.842951  2.041502  2.818372
  2.349724  1.893817  3.091846
MBP1_YARLI  1.679015  1.788034  1.510184  1.674717  1.525822  1.366472
  0.000000  1.458949  1.099978  1.258665  1.245131  1.791822  1.892723
  1.798693  1.546586  2.470074
MBP1_SCHPO  1.734556  2.092392  1.805609  2.266314  1.826937  2.111250
  1.458949  0.000000  1.965611  1.650181  1.760901  1.882590  1.829431
  1.798599  1.652280  2.232678
MBP1_USTMA  2.205033  1.858878  1.780957  2.264786  1.371732  1.907877
  1.099978  1.965611  0.000000  1.361737  1.543623  1.598177  1.516216
  1.508336  1.687661  1.953468
MBP1_ASPNI  2.021848  2.098264  1.919228  2.478006  1.702409  2.038152
  1.258665  1.650181  1.361737  0.000000  0.183195  1.506196  2.082772
  1.858936  1.901732  2.043755
MBP1_ASPTE  2.012439  2.010324  1.961973  2.696935  1.765129  1.842951
  1.245131  1.760901  1.543623  0.183195  0.000000  1.320001  1.972475
  1.766234  1.810925  1.734993
MBP1_CRYNE  2.665819  2.531040  2.827827  3.451189  1.921376  2.041502
  1.791822  1.882590  1.598177  1.506196  1.320001  0.000000  1.606068
  1.876348  1.696345  1.378680
MBP1_GIBZE  1.676493  1.531216  1.791314  2.487955  1.853606  2.818372
  1.892723  1.829431  1.516216  2.082772  1.972475  1.606068  0.000000
  0.497095  0.523613  1.052197
MBP1_NEUCR  1.594736  1.410911  2.121850  2.758670  2.028292  2.349724
  1.798693  1.798599  1.508336  1.858936  1.766234  1.876348  0.497095
  0.000000  0.488870  1.020647
MBP1_MAGGR  1.572812  1.432764  1.882121  2.041124  1.834001  1.893817
  1.546586  1.652280  1.687661  1.901732  1.810925  1.696345  0.523613
  0.488870  0.000000  1.108262
MBP1_ASPFU  1.998416  2.300807  2.853653  2.617325  2.184056  3.091846
  2.470074  2.232678  1.953468  2.043755  1.734993  1.378680  1.052197
  1.020647  1.108262  0.000000


PHYLIP input data: Mbp1 APSES domains

16  84
MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG
MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG
MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG
MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG
MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG
MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG
MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG
MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG
MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS--
MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G
MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G
MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS
MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD
MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE
MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD
MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN

PHYLIP distance matrix: Mbp1 APSES domains

   16
MBP1_SACCE  0.000000  0.170047  0.205399  0.247219  0.487569  0.524603
  0.579198  0.798266  0.690172  0.527376  0.544473  0.657178  0.895524
  0.862050  0.905898  0.907783
MBP1_CANGL  0.170047  0.000000  0.279198  0.319549  0.559059  0.573474
  0.519177  0.789154  0.733572  0.615596  0.625874  0.665870  0.899041
  0.880370  0.935112  0.883959
MBP1_EREGO  0.205399  0.279198  0.000000  0.182532  0.544175  0.510304
  0.585979  0.846715  0.738784  0.557436  0.539410  0.674472  0.880525
  0.873348  0.850046  0.864623
MBP1_KLULA  0.247219  0.319549  0.182532  0.000000  0.467085  0.453277
  0.638363  0.813078  0.772358  0.567769  0.575968  0.690719  0.852917
  0.882337  0.830886  0.904034
MBP1_CANAL  0.487569  0.559059  0.544175  0.467085  0.000000  0.120290
  0.589271  0.686670  0.799405  0.647996  0.639552  0.681593  0.746085
  0.792284  0.817362  0.869237
MBP1_DEBHA  0.524603  0.573474  0.510304  0.453277  0.120290  0.000000
  0.555420  0.667709  0.800353  0.592738  0.583278  0.641173  0.744716
  0.811525  0.809515  0.839041
MBP1_YARLI  0.579198  0.519177  0.585979  0.638363  0.589271  0.555420
  0.000000  0.473875  0.462053  0.388599  0.421408  0.503568  0.581799
  0.593335  0.676734  0.691392
MBP1_SCHPO  0.798266  0.789154  0.846715  0.813078  0.686670  0.667709
  0.473875  0.000000  0.532761  0.545135  0.573415  0.643554  0.593169
  0.603559  0.762385  0.624657
MBP1_USTMA  0.690172  0.733572  0.738784  0.772358  0.799405  0.800353
  0.462053  0.532761  0.000000  0.346127  0.383120  0.560953  0.597524
  0.682290  0.675589  0.672514
MBP1_ASPNI  0.527376  0.615596  0.557436  0.567769  0.647996  0.592738
  0.388599  0.545135  0.346127  0.000000  0.064477  0.503545  0.673114
  0.778854  0.845557  0.762898
MBP1_ASPTE  0.544473  0.625874  0.539410  0.575968  0.639552  0.583278
  0.421408  0.573415  0.383120  0.064477  0.000000  0.534114  0.699665
  0.812899  0.847328  0.802412
MBP1_CRYNE  0.657178  0.665870  0.674472  0.690719  0.681593  0.641173
  0.503568  0.643554  0.560953  0.503545  0.534114  0.000000  0.650085
  0.653523  0.713330  0.695510
MBP1_GIBZE  0.895524  0.899041  0.880525  0.852917  0.746085  0.744716
  0.581799  0.593169  0.597524  0.673114  0.699665  0.650085  0.000000
  0.227631  0.185991  0.289073
MBP1_NEUCR  0.862050  0.880370  0.873348  0.882337  0.792284  0.811525
  0.593335  0.603559  0.682290  0.778854  0.812899  0.653523  0.227631
  0.000000  0.330632  0.480412
MBP1_MAGGR  0.905898  0.935112  0.850046  0.830886  0.817362  0.809515
  0.676734  0.762385  0.675589  0.845557  0.847328  0.713330  0.185991
  0.330632  0.000000  0.316199
MBP1_ASPFU  0.907783  0.883959  0.864623  0.904034  0.869237  0.839041
  0.691392  0.624657  0.672514  0.762898  0.802412  0.695510  0.289073
  0.480412  0.316199  0.000000

[end]

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