Difference between revisions of "VMD tutorial Part 02"

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* http://www.scs.uiuc.edu/~schulten/tutorials/evolution/index.html Multiseq tutorial
 
* http://www.scs.uiuc.edu/~schulten/tutorials/evolution/index.html Multiseq tutorial
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#run VMD
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#select VMD Main → Extensions → Analysis → MultiSeq
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#you wil be prompted to select a directory for storing Metadata. This will be used to store a number of NCBI databases that are required for the analysis of sequence/phylogeny/structure relationships. They include
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:*The CBI Taxonomy database
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:*A mapping between NCBI GIs and taxonomy (which organism does a GI come from)
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:*The enzyme nmenclature database
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:*A mapping of SWISS-PROT IDs to PDB
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:*SWISS-PROT to NCBI Taxonomy mapping

Revision as of 02:02, 6 October 2007

Multiple Molecules and Multiple Alignment

 

Under construction

 



  1. run VMD
  2. select VMD Main → Extensions → Analysis → MultiSeq
  3. you wil be prompted to select a directory for storing Metadata. This will be used to store a number of NCBI databases that are required for the analysis of sequence/phylogeny/structure relationships. They include
  • The CBI Taxonomy database
  • A mapping between NCBI GIs and taxonomy (which organism does a GI come from)
  • The enzyme nmenclature database
  • A mapping of SWISS-PROT IDs to PDB
  • SWISS-PROT to NCBI Taxonomy mapping