Difference between revisions of "VMD tutorial Part 02"
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* http://www.scs.uiuc.edu/~schulten/tutorials/evolution/index.html Multiseq tutorial | * http://www.scs.uiuc.edu/~schulten/tutorials/evolution/index.html Multiseq tutorial | ||
| + | |||
| + | |||
| + | #run VMD | ||
| + | #select VMD Main → Extensions → Analysis → MultiSeq | ||
| + | #you wil be prompted to select a directory for storing Metadata. This will be used to store a number of NCBI databases that are required for the analysis of sequence/phylogeny/structure relationships. They include | ||
| + | :*The CBI Taxonomy database | ||
| + | :*A mapping between NCBI GIs and taxonomy (which organism does a GI come from) | ||
| + | :*The enzyme nmenclature database | ||
| + | :*A mapping of SWISS-PROT IDs to PDB | ||
| + | :*SWISS-PROT to NCBI Taxonomy mapping | ||
Revision as of 02:02, 6 October 2007
Multiple Molecules and Multiple Alignment
Under construction
- http://www.scs.uiuc.edu/~schulten/tutorials/evolution/index.html Multiseq tutorial
- run VMD
- select VMD Main → Extensions → Analysis → MultiSeq
- you wil be prompted to select a directory for storing Metadata. This will be used to store a number of NCBI databases that are required for the analysis of sequence/phylogeny/structure relationships. They include
- The CBI Taxonomy database
- A mapping between NCBI GIs and taxonomy (which organism does a GI come from)
- The enzyme nmenclature database
- A mapping of SWISS-PROT IDs to PDB
- SWISS-PROT to NCBI Taxonomy mapping
