Difference between revisions of "Lecture 19"

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'''Update Warning!'''
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This page has not been revised yet for the 2007 Fall term. Some of the slides may be reused, but please consider the page as a whole out of date as long as this warning appears here.
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__NOTOC__
 
__NOTOC__
 
<small>[[Lecture_18|(Previous lecture)]] ... [[Lecture_20|(Next lecture)]]</small>  
 
<small>[[Lecture_18|(Previous lecture)]] ... [[Lecture_20|(Next lecture)]]</small>  
  
==Microarray Analysis==
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==Comparative Genomics==
  
 
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<!-- Add:
 
* Summary points
 
* Summary points
 
* Exercises
 
* Exercises
* Further reading
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* Further reading -->
  
 
(Some of the slides in this lecture are based on material delivered by John Quackenbush at the February 2006 [http://www.bioinformatics.ca '''CBW workshop'''] in Toronto.)
 
  
 
==Lecture Slides==
 
==Lecture Slides==
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======Slide 008======
 
======Slide 008======
 
[[Image:L19_s008.jpg|frame|none|Lecture 19, Slide 008<br>
 
[[Image:L19_s008.jpg|frame|none|Lecture 19, Slide 008<br>
Rogojina ''et al.'' (2003) Use of Affymetrix to spotted oligonucleotide microarrays using two retinal epithelial cell lines. Molecular Vision 9:482-96
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======Slide 009======
 
======Slide 009======
 
[[Image:L19_s009.jpg|frame|none|Lecture 19, Slide 009<br>
 
[[Image:L19_s009.jpg|frame|none|Lecture 19, Slide 009<br>
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[[Image:L19_s016.jpg|frame|none|Lecture 19, Slide 016<br>
 
[[Image:L19_s016.jpg|frame|none|Lecture 19, Slide 016<br>
Writeup in [http://bioinformatics.oxfordjournals.org/cgi/reprint/19/5/651 Pertea ''et al.'' (2003) Bioinformatics '''19''':651-652]
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======Slide 017======
 
======Slide 017======
 
[[Image:L19_s017.jpg|frame|none|Lecture 19, Slide 017<br>
 
[[Image:L19_s017.jpg|frame|none|Lecture 19, Slide 017<br>
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======Slide 027======
 
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[[Image:L19_s027.jpg|frame|none|Lecture 19, Slide 027<br>
 
[[Image:L19_s027.jpg|frame|none|Lecture 19, Slide 027<br>
(From J. Quackenbush) Bulk of genes lie on zero-line but there is evidence of differential expression
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======Slide 028======
 
======Slide 028======
 
[[Image:L19_s028.jpg|frame|none|Lecture 19, Slide 028<br>
 
[[Image:L19_s028.jpg|frame|none|Lecture 19, Slide 028<br>
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[[Image:L19_s030.jpg|frame|none|Lecture 19, Slide 030<br>
 
[[Image:L19_s030.jpg|frame|none|Lecture 19, Slide 030<br>
 
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[[Image:L19_s031.jpg|frame|none|Lecture 19, Slide 031<br>
 
 
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[[Image:L19_s032.jpg|frame|none|Lecture 19, Slide 032<br>
 
Variance stabilization is available e.g. within the MIDAS package.
 
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[[Image:L19_s033.jpg|frame|none|Lecture 19, Slide 033<br>
 
 
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[[Image:L19_s034.jpg|frame|none|Lecture 19, Slide 034<br>
 
 
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[[Image:L19_s035.jpg|frame|none|Lecture 19, Slide 035<br>
 
 
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[[Image:L19_s036.jpg|frame|none|Lecture 19, Slide 036<br>
 
 
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[[Image:L19_s037.jpg|frame|none|Lecture 19, Slide 037<br>
 
 
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[[Image:L19_s038.jpg|frame|none|Lecture 19, Slide 038<br>
 
 
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[[Image:L19_s039.jpg|frame|none|Lecture 19, Slide 039<br>
 
 
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[[Image:L19_s040.jpg|frame|none|Lecture 19, Slide 040<br>
 
 
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[[Image:L19_s041.jpg|frame|none|Lecture 19, Slide 041<br>
 
 
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[[Image:L19_s042.jpg|frame|none|Lecture 19, Slide 042<br>
 
 
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[[Image:L19_s043.jpg|frame|none|Lecture 19, Slide 043<br>
 
 
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[[Image:L19_s044.jpg|frame|none|Lecture 19, Slide 044<br>
 
 
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[[Image:L19_s046.jpg|frame|none|Lecture 19, Slide 046<br>
 
 
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[[Image:L19_s047.jpg|frame|none|Lecture 19, Slide 047<br>
 
 
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[[Image:L19_s048.jpg|frame|none|Lecture 19, Slide 048<br>
 
 
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[[Image:L19_s049.jpg|frame|none|Lecture 19, Slide 049<br>
 
 
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[[Image:L19_s051.jpg|frame|none|Lecture 19, Slide 051<br>
 
  
 
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Latest revision as of 15:29, 1 September 2007

Update Warning! This page has not been revised yet for the 2007 Fall term. Some of the slides may be reused, but please consider the page as a whole out of date as long as this warning appears here.

 

 


(Previous lecture) ... (Next lecture)

Comparative Genomics

...


Lecture Slides

Slide 001
Lecture 19, Slide 001
Slide 002
Lecture 19, Slide 002
Slide 003
Lecture 19, Slide 003
Slide 004
Lecture 19, Slide 004
Slide 005
Lecture 19, Slide 005
Slide 006
Lecture 19, Slide 006
Slide 007
Lecture 19, Slide 007
Slide 008
Lecture 19, Slide 008
Slide 009
Lecture 19, Slide 009
Slide 010
Lecture 19, Slide 010
Slide 011
Lecture 19, Slide 011
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Lecture 19, Slide 012
Slide 013
Lecture 19, Slide 013
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Lecture 19, Slide 014
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Lecture 19, Slide 015
Slide 016
Lecture 19, Slide 016
Slide 017
Lecture 19, Slide 017
Slide 018
Lecture 19, Slide 018
Slide 019
Lecture 19, Slide 019
Slide 020
Lecture 19, Slide 020
Slide 021
Lecture 19, Slide 021
Slide 022
Lecture 19, Slide 022
Slide 023
Lecture 19, Slide 023
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Lecture 19, Slide 024
Slide 025
Lecture 19, Slide 025
Slide 026
Lecture 19, Slide 026
Slide 027
Lecture 19, Slide 027
Slide 028
Lecture 19, Slide 028
Slide 029
Lecture 19, Slide 029
Slide 030
Lecture 19, Slide 030