Difference between revisions of "BIN-SX-MD"

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m (Created page with "<div id="BIO"> <div class="b1"> Molecular Dynamics </div> {{Vspace}} <div class="keywords"> <b>Keywords:</b>  Molecular dynamics trajectories, equilibrium, mean...")
 
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<div id="BIO">
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<div id="ABC">
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<div style="padding:5px; border:1px solid #000000; background-color:#f2fafa; font-size:300%; font-weight:400; color: #000000; width:100%;">
 
Molecular Dynamics
 
Molecular Dynamics
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  </div>
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<div style="padding:5px; margin-top:20px; margin-bottom:10px; background-color:#f2fafa; font-size:30%; font-weight:200; color: #000000; ">
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(Molecular dynamics trajectories, equilibrium, means and states; estimating entropy)
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  {{Vspace}}
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</div>
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<div class="keywords">
 
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<b>Keywords:</b>&nbsp;
 
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Molecular dynamics trajectories, equilibrium, means and states; estimating entropy
 
 
</div>
 
</div>
  
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{{Vspace}}
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{{Smallvspace}}
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__TOC__
 
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{{Vspace}}
 
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{{STUB}}
 
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{{Vspace}}
 
  
  
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<div style="padding:5px; border:1px solid #000000; background-color:#f2fafa33; font-size:85%;">
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<div style="font-size:118%;">
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<b>Abstract:</b><br />
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<section begin=abstract />
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...
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<section end=abstract />
 
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<div id="ABC-unit-framework">
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<!-- ============================  -->
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== Abstract ==
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<hr>
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "abstract" -->
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<table>
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<tr>
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<td style="padding:10px;">
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<b>Objectives:</b><br />
 
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...
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</td>
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{{Vspace}}
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<td style="padding:10px;">
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<b>Outcomes:</b><br />
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== This unit ... ==
 
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=== Prerequisites ===
 
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "prerequisites" -->
 
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<!-- included from "ABC-unit_components.wtxt", section: "notes-prerequisites" -->
 
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You need to complete the following units before beginning this one:
 
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*[[BIN-SX-Molecular_forcefields]]
 
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{{Vspace}}
 
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=== Objectives ===
 
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "objectives" -->
 
 
...
 
...
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</td>
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</tr>
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</table>
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<!-- ============================  -->
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<hr>
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<b>Deliverables:</b><br />
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<section begin=deliverables />
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<li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li>
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<li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li>
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<li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li>
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<section end=deliverables />
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<!-- ============================  -->
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<hr>
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<section begin=prerequisites />
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<b>Prerequisites:</b><br />
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This unit builds on material covered in the following prerequisite units:<br />
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*[[BIN-SX-Molecular_forcefields|BIN-SX-Molecular_forcefields (Molecular Forcefields)]]
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<section end=prerequisites />
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<!-- ============================  -->
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</div>
  
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{{Smallvspace}}
  
  
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=== Outcomes ===
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{{STUB}}
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "outcomes" -->
 
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...
 
  
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{{Smallvspace}}
  
  
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=== Deliverables ===
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__TOC__
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "deliverables" -->
 
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<!-- included from "ABC-unit_components.wtxt", section: "deliverables-time_management" -->
 
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*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
 
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<!-- included from "ABC-unit_components.wtxt", section: "deliverables-journal" -->
 
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*<b>Journal</b>: Document your progress in your [[FND-Journal|course journal]].
 
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<!-- included from "ABC-unit_components.wtxt", section: "deliverables-insights" -->
 
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*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|insights! page]].
 
  
 
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=== Evaluation ===
 
=== Evaluation ===
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "evaluation" -->
 
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<!-- included from "ABC-unit_components.wtxt", section: "eval-none" -->
 
 
<b>Evaluation: NA</b><br />
 
<b>Evaluation: NA</b><br />
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:This unit is not evaluated for course marks.
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<div style="margin-left: 2rem;">This unit is not evaluated for course marks.</div>
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{{Vspace}}
 
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</div>
 
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<div id="BIO">
 
 
== Contents ==
 
== Contents ==
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "contents" -->
 
 
...
 
...
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== Further reading, links and resources ==
 
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<!-- {{#pmid: 19957275}} -->
 
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<!-- {{WWW|WWW_GMOD}} -->
 
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<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 
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{{Vspace}}
 
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== Notes ==
 
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "notes" -->
 
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<!-- included from "ABC-unit_components.wtxt", section: "notes" -->
 
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<references />
 
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{{Vspace}}
 
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</div>
 
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<div id="ABC-unit-framework">
 
 
== Self-evaluation ==
 
== Self-evaluation ==
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<!-- included from "../components/BIN-SX-MD.components.wtxt", section: "self-evaluation" -->
 
 
<!--
 
<!--
 
=== Question 1===
 
=== Question 1===
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== Further reading, links and resources ==
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<!-- {{#pmid: 19957275}} -->
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<!-- {{WWW|WWW_GMOD}} -->
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<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
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== Notes ==
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<references />
  
 
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<!-- included from "ABC-unit_components.wtxt", section: "ABC-unit_ask" -->
 
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----
 
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{{Vspace}}
 
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<b>If in doubt, ask!</b> If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
 
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<div class="about">
 
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*0.1 First stub
 
*0.1 First stub
 
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[[Category:ABC-units]]
 
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{{CC-BY}}
 
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[[Category:ABC-units]]
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Latest revision as of 09:27, 25 September 2020

Molecular Dynamics

(Molecular dynamics trajectories, equilibrium, means and states; estimating entropy)


 


Abstract:

...

Objectives:
...

Outcomes:
...

Deliverables:

  • Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
  • Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
  • Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.

    • Prerequisites:
    This unit builds on material covered in the following prerequisite units:


     


    Sorry!

    This page is only a stub; it is here as a placeholder to establish the logical framework of the site but there is no significant content as yet. Do not work with this material until it is updated to "live" status.


     



     


    Evaluation

    Evaluation: NA

    This unit is not evaluated for course marks.

    Contents

    ...

    Self-evaluation

    Further reading, links and resources

    Notes


     


    About ...
     
    Author:

    Boris Steipe <boris.steipe@utoronto.ca>

    Created:

    2017-08-05

    Modified:

    2017-08-05

    Version:

    0.1

    Version history:

    • 0.1 First stub

    CreativeCommonsBy.png This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.

    Sorry!

    This page is only a stub; it is here as a placeholder to establish the logical framework of the site but there is no significant content as yet. Do not work with this material until it is updated to "live" status.

    Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=BIN-SX-MD&oldid=11699"