Difference between revisions of "BIN-EXPR-Multiple testing"

From "A B C"
Jump to navigation Jump to search
m
m
 
(One intermediate revision by the same user not shown)
Line 38: Line 38:
 
<b>Deliverables:</b><br />
 
<b>Deliverables:</b><br />
 
<section begin=deliverables />
 
<section begin=deliverables />
−
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-time_management" -->
+
<li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li>
−
*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
+
<li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li>
−
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" -->
+
<li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li>
−
*<b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.
 
−
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" -->
 
−
*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].
 
 
<section end=deliverables />
 
<section end=deliverables />
 
<!-- ============================  -->
 
<!-- ============================  -->
Line 49: Line 46:
 
<section begin=prerequisites />
 
<section begin=prerequisites />
 
<b>Prerequisites:</b><br />
 
<b>Prerequisites:</b><br />
−
<!-- included from "./data/ABC-unit_components.txt", section: "notes-prerequisites" -->
+
This unit builds on material covered in the following prerequisite units:<br />
−
This unit builds on material covered in the following prerequisite units:
 
 
*[[BIN-EXPR-DE|BIN-EXPR-DE (Discovering Differentially Expressed Genes)]]
 
*[[BIN-EXPR-DE|BIN-EXPR-DE (Discovering Differentially Expressed Genes)]]
 
*[[FND-STA-Significance|FND-STA-Significance (Significance)]]
 
*[[FND-STA-Significance|FND-STA-Significance (Significance)]]
Line 69: Line 65:
  
  
 +
=== Evaluation ===
 +
<b>Evaluation: NA</b><br />
 +
<div style="margin-left: 2rem;">This unit is not evaluated for course marks.</div>
 
== Contents ==
 
== Contents ==
−
<!-- included from "./components/BIN-EXPR-Multiple_testing.components.txt", section: "contents" -->
 
 
{{Smallvspace}}
 
{{Smallvspace}}
 
{{Task|1=
 
{{Task|1=
Line 77: Line 75:
  
 
{{Vspace}}
 
{{Vspace}}
−
== Self-evaluation ==
 
−
<!--
 
−
=== Question 1===
 
−
 
−
Question ...
 
−
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:800px">
 
−
Answer ...
 
−
<div class="mw-collapsible-content">
 
−
Answer ...
 
−
 
−
</div>
 
−
  </div>
 
−
 
−
  {{Vspace}}
 
−
 
−
-->
 
−
== Notes ==
 
−
<!-- included from "./components/BIN-EXPR-Multiple_testing.components.txt", section: "notes" -->
 
−
<!-- included from "./data/ABC-unit_components.txt", section: "notes" -->
 
−
<references />
 
−
== Further reading, links and resources ==
 
−
<!-- {{#pmid: 19957275}} -->
 
−
<!-- {{WWW|WWW_GMOD}} -->
 
−
<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
<!-- included from "./data/ABC-unit_components.txt", section: "ABC-unit_ask" -->
 
−
 
−
----
 
  
 
{{Vspace}}
 
{{Vspace}}
  
−
<b>If in doubt, ask!</b> If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
 
−
 
−
----
 
−
 
−
{{Vspace}}
 
  
 
<div class="about">
 
<div class="about">
Line 126: Line 87:
 
:2017-08-05
 
:2017-08-05
 
<b>Modified:</b><br />
 
<b>Modified:</b><br />
−
:2017-11-10
+
:2020-09-24
 
<b>Version:</b><br />
 
<b>Version:</b><br />
−
:1.0
+
:1.1
 
<b>Version history:</b><br />
 
<b>Version history:</b><br />
 +
*1.1 Maintainance
 
*1.0 First live version
 
*1.0 First live version
 
*0.1 First stub
 
*0.1 First stub
 
</div>
 
</div>
−
[[Category:ABC-units]]
 
−
<!-- included from "./data/ABC-unit_components.txt", section: "ABC-unit_footer" -->
 
  
 
{{CC-BY}}
 
{{CC-BY}}
  
 +
[[Category:ABC-units]]
 +
{{UNIT}}
 +
{{LIVE}}
 
</div>
 
</div>
 
<!-- [END] -->
 
<!-- [END] -->

Latest revision as of 07:08, 25 September 2020

Multiple Testing and Significance

(Multiple testing problem. Concepts, Bonferroni correction and FDR)


 


Abstract:

Searching for significant effects in high-throughput experiments changes the statistical odds of finding highly unusual outcomes. This needs to be properly corrected, especially in situations like expression analysis where we observe tens of thousands of measurements simultaneously and need to determine which ones should be followed up on.

Objectives:
This unit will ...

  • ... introduce the concepts of probability correction with Family Wise Error rate and False Discovery Rate.

Outcomes:
After working through this unit you ...

  • ... are aware of the need to correct significance levels in situations with multiple observations;
  • ... are familar with the ideas of the Bonferroni correction and control with the False Discovery Rate (FDR).

Deliverables:

  • Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
  • Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
  • Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.

    • Prerequisites:
    This unit builds on material covered in the following prerequisite units:


     



     



     


    Evaluation

    Evaluation: NA

    This unit is not evaluated for course marks.

    Contents

     

    Task:


     


     


    About ...
     
    Author:

    Boris Steipe <boris.steipe@utoronto.ca>

    Created:

    2017-08-05

    Modified:

    2020-09-24

    Version:

    1.1

    Version history:

    • 1.1 Maintainance
    • 1.0 First live version
    • 0.1 First stub

    CreativeCommonsBy.png This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.

    Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=BIN-EXPR-Multiple_testing&oldid=11653"