Difference between revisions of "BIN-Info sources"
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Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.
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<section begin=deliverables /> | <section begin=deliverables /> | ||
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| − | + | <li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li> | |
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" --> | <!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" --> | ||
| − | + | <li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li> | |
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" --> | <!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" --> | ||
| − | + | <li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li> | |
<section end=deliverables /> | <section end=deliverables /> | ||
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* Visit the [https://academic.oup.com/nar Nucleic Acids Research Journal (NAR)] site and find the current database volume and the Web service volume. | * Visit the [https://academic.oup.com/nar Nucleic Acids Research Journal (NAR)] site and find the current database volume and the Web service volume. | ||
* Task yourself to find at least one database and service that interests you, visit it and poke around. You should aim to develop an intuition for what to expect with such resources and how to use the services. | * Task yourself to find at least one database and service that interests you, visit it and poke around. You should aim to develop an intuition for what to expect with such resources and how to use the services. | ||
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<b>Modified:</b><br /> | <b>Modified:</b><br /> | ||
| − | : | + | :2020-09-15 |
<b>Version:</b><br /> | <b>Version:</b><br /> | ||
| − | :1. | + | :1.2 |
<b>Version history:</b><br /> | <b>Version history:</b><br /> | ||
| + | *1.2 Removed bioinformatics.ca link | ||
*1.1 Bioinformatics.ca links database no longer exists | *1.1 Bioinformatics.ca links database no longer exists | ||
*1.0.1 Update Biostars link | *1.0.1 Update Biostars link | ||
Revision as of 20:58, 15 September 2020
Information Sources for Bioinformatics
(Wikipedia, NAR, Bioinformatics.ca, PubMed, Citation index)
Abstract:
This unit introduces key information sources for bioinformatics: journals, forums, and supporting sites.
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Objectives: |
Outcomes: |
Deliverables:
Contents
Contents
Task:
- Read the introductory notes on bioinformatics concepts for some general observations on bioinformatics, to set the stage.
- Read the introductory notes on information sources for bioinformatics.
Journals
Task:
- Visit the Nucleic Acids Research Journal (NAR) site and find the current database volume and the Web service volume.
- Task yourself to find at least one database and service that interests you, visit it and poke around. You should aim to develop an intuition for what to expect with such resources and how to use the services.
Incidentally: you can subscribe to regular Table of Contents updates from any journal. nature and Science should for sure be in your inbox, but subscribe to some of the bioinformatics journal alerts too, at least for this term. A current list of journals is here: List of bioinformatics journals.
Forums
Much current, active exchange of bioinformatics knowledge happens in non-traditional platforms:
Task:
Visit each of the forums below and find (at least) one item that interests you.
BioStars: General bioinformatics, computational-, and systems biology questions (timesink warning!)
Reddit: the bioinformatics "subreddit" (timesink warning!)
R-help: The R programming language
Stack Overflow: R-related questions
BioConductor Support: for all questions about the BioConductor Project
Cross Validated: statistics related questions on Stack-exchange
Self-evaluation
Notes
Further reading, links and resources
If in doubt, ask! If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
About ...
Author:
- Boris Steipe <boris.steipe@utoronto.ca>
Created:
- 2017-08-05
Modified:
- 2020-09-15
Version:
- 1.2
Version history:
- 1.2 Removed bioinformatics.ca link
- 1.1 Bioinformatics.ca links database no longer exists
- 1.0.1 Update Biostars link
- 1.0 Completed to first live version
- 0.1 Material collected from previous tutorial
This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.
