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<div style="padding: 5px; background: #457DB5;  border:solid 1px #AAAAAA; font-size:300%;font-weight:bold; color:#FFFFFF">
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#REDIRECT [[Bioinformatics_Main_Page]]
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BCH441 - Bioinformatics
 
  
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<div style="font-size:50%;font-weight:normal;">
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{{Vspace}}
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Welcome to the BCH441 Course Wiki.
 
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</div>
 
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</div>
 
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&nbsp;
 
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<small>'''This is our main tool to coordinate information, activities and projects in University of Toronto's bioinformatics course BCH441'''. If you are not one of our students, you can still browse this site, however only users with a login  account can edit or contribute or edit material. If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the [http://en.wikipedia.org/wiki/Bioinformatics Wikipedia article on bioinformatics], or visit [http://wikiomics.org/wiki/Main_Page Wikiomics]. Contact boris.steipe(at)utoronto.ca with any questions you may have.</small>
 
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−
 
 
−
== The Course ==
 
−
 
 
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<table>
 
−
<tr><td class="syllabus">Test</td></tr>
 
−
</table>
 
−
 
 
−
 
 
−
 
 
−
Follow the link to read feedback from those who have taken this course before you..
 
  
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* '''[[Feedback_2007|Fall 2007 feedback]]'''
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<div id="BIO">
 +
<div class="b1" style="padding-left:7%;">
  
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I anticipate changes to the grading scheme, the schedule and the assignments. All changes will be posted here as they get decided on. Check back here in August.
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&nbsp;<br/>
  
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<div style="font-size:150%;font-weight:bold;">
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<div style="padding: 5px; background: #A6AFD0;  border:solid 1px #AAAAAA; font-size:200%;font-weight:bold;">
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[[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">A&nbsp;&nbsp;B&nbsp;&nbsp;C</span>]]
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The first session for the 2008 term will be held Monday, September 8., 12:00. <br>
 
−
It is crucial that you make every effort to attend: we will be discussing access to the course Wiki, the mailing list and how groupwork will be organized.
 
 
</div>
 
</div>
  
−
== Organization ==
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[[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">Applying Bioinformatics Concepts</span>]]
−
 
 
−
'''Slowly gearing up for the 2008 Fall term ...'''
 
−
 
 
−
;Dates
 
−
:Monday and Thursday, 12:00 to 13:00
 
−
:<small>Optional tutorial sessions will be offered as the need arises, most likely on Mondays, probably from 13:00 to 14:00.</small>
 
−
:First class: Monday, September 8. 2008
 
−
 
 
−
;Location
 
−
:MSB 2173 (Medical Sciences Building)
 
−
 
 
−
See the [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web page] for general information.
 
−
 
 
−
 
 
−
== Lecture Schedule ==
 
−
<small>This is the current schedule for 2008, but changes may be still be made if required.</small>
 
−
 
 
−
 
 
−
<table cellpadding="5">
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">'''#'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Date'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Lecturer'''</td>
 
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<td  style="border:solid 1px #000000;">'''Topic'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Handout'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Book'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">0</td>
 
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<td  style="border:solid 1px #000000;">Mon. Sept 8</td>
 
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<td  style="border:solid 1px #000000;">Steipe</td>
 
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<td  style="border:solid 1px #000000;">Organisation and Orientation</td>
 
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<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
</table>
 
−
 
 
−
 
 
−
 
 
−
<table cellpadding="5">
 
−
 
 
−
<tr>
 
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<td colspan="6"  style="border:solid 1px #000000;">'''The objects of bioinformatics'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">'''#'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Date'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Lecturer'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Topic'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Handout'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Book'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">1</td>
 
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<td  style="border:solid 1px #000000;">Thu. Sept 11</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Sequence abstraction and sequence databases</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
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<td  style="border:solid 1px #000000;">Ch 3</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
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<td  style="border:solid 1px #000000;">2</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Sept 15</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Protein Structure Databases</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">3</td>
 
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<td  style="border:solid 1px #000000;">Thu. Sept 18</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Bioinformatics methods</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
</table>
 
−
 
 
−
 
 
−
 
 
−
<table cellpadding="5">
 
−
 
 
−
<tr>
 
−
<td colspan="6"  style="border:solid 1px #000000;">'''Analysis based on properties'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">'''#'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Date'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Lecturer'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Topic'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Handout'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Book'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">4</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Sept 22</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Sequence properties</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch 4.9, 11, 12</td>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">5</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Sept 25</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;"> Sequence Analysis </td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">6</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Sept 29</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Interpreting protein structure</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 14</td>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">7</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Oct 2</td>
 
−
<td  style="border:solid 1px #000000;">Parkinson</td>
 
−
<td  style="border:solid 1px #000000;">Genome sequencing, genome browsers</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 9, 10</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">8</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Oct 6</td>
 
−
<td  style="border:solid 1px #000000;">Parkinson</td>
 
−
<td  style="border:solid 1px #000000;">Genomes and genome structure</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
 
 
−
</table>
 
−
 
 
−
 
 
−
 
 
−
<table cellpadding="5">
 
−
 
 
−
<tr>
 
−
<td colspan="6"  style="border:solid 1px #000000;">'''Analysis based on homology'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">'''#'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Date'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Lecturer'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Topic'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Handout'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Book'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">9</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Oct 9.</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Homology I: the principles</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">10</td>
 
−
<td  style="border:solid 1px #000000;">'''Thu. Oct 16'''</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Homology II: Sequence alignment</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 4</td>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">11</td>
 
−
<td  style="border:solid 1px #000000;">Mo. Oct 20</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Homology III: Multiple sequence alignment</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 5</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">12</td>
 
−
<td  style="border:solid 1px #000000;">'''Mon. Oct 20'''</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Homology IV: fast sequence database searches</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch 6</td>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">13</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Oct 23</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Structural domains</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">14</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Oct 27</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Homology modeling and structure prediction</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 13</td>
 
−
 
 
−
</table>
 
−
 
 
−
 
 
−
 
 
−
<table cellpadding="5">
 
−
 
 
−
<tr>
 
−
<td colspan="6"  style="border:solid 1px #000000;">'''Analysis based on conservation'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">'''#'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Date'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Lecturer'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Topic'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Handout'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Book'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">15</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Oct 30</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Essential concepts of probability and information theory</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Appendix A</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">16</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Nov 3</td>
 
−
<td  style="border:solid 1px #000000;">Parkinson</td>
 
−
<td  style="border:solid 1px #000000;">Comparative genomics</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 9.8, 10.8</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">17</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Nov 6</td>
 
−
<td  style="border:solid 1px #000000;">NN</td>
 
−
<td  style="border:solid 1px #000000;">Human population genomics</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">18</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Nov 10</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Phylogenetic analysis I</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 7, 8</td>
 
−
</tr>
 
  
−
<tr>
+
<div style="font-size:50%;font-weight:bold;">
−
<td  style="border:solid 1px #000000;">19</td>
+
[[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">Boris Steipe&nbsp;&nbsp;(2006 – 2020)</span>]]
−
<td  style="border:solid 1px #000000;">Thu. Nov 13</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Phylogenetic analysis II</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">20</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Nov 17</td>
 
−
<td  style="border:solid 1px #000000;">Steipe</td>
 
−
<td  style="border:solid 1px #000000;">Protein structure motifs</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
 
 
−
</table>
 
−
 
 
−
 
 
−
<table cellpadding="5">
 
−
 
 
−
<tr>
 
−
<td colspan="6"  style="border:solid 1px #000000;">'''Analysis based on context'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">'''#'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Date'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Lecturer'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Topic'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Handout'''</td>
 
−
<td  style="border:solid 1px #000000;">'''Book'''</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">21</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Nov 20</td>
 
−
<td  style="border:solid 1px #000000;"> Wodak </td>
 
−
<td  style="border:solid 1px #000000;">Gene regulation I</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 15</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">22</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Nov 24</td>
 
−
<td  style="border:solid 1px #000000;">Wodak</td>
 
−
<td  style="border:solid 1px #000000;">Gene regulation II</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">23</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Nov 27</td>
 
−
<td  style="border:solid 1px #000000;">Wodak</td>
 
−
<td  style="border:solid 1px #000000;">Functional annotation</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Appendix A</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">24</td>
 
−
<td  style="border:solid 1px #000000;">Mon. Dec 1</td>
 
−
<td  style="border:solid 1px #000000;">Wodak</td>
 
−
<td  style="border:solid 1px #000000;">Metabolic networks</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 17.1</td>
 
−
</tr>
 
−
 
 
−
<tr>
 
−
<td  style="border:solid 1px #000000;">25</td>
 
−
<td  style="border:solid 1px #000000;">Thu. Dec 4</td>
 
−
<td  style="border:solid 1px #000000;">Parkinson</td>
 
−
<td  style="border:solid 1px #000000;">Computational systems biology</td>
 
−
<td  style="border:solid 1px #000000;">-</td>
 
−
<td  style="border:solid 1px #000000;">Ch. 17</td>
 
−
</tr>
 
−
 
 
−
 
 
−
</table>
 
−
<!--
 
−
 
 
−
;Sequences
 
−
<ol  start="2">
 
−
<li>[[Lecture_02|'''Sequence Abstraction + Sequence Databases''']] (Boris,  Thursday, Sept. 13)
 
−
<li>[[Lecture_03|'''Sequence Properties''']] (Boris,  Monday, Sept. 17)
 
−
<li>[[Lecture_04|'''Sequence Analysis''']] (Boris,  Thursday, Sept. 20)
 
−
<li>[[Lecture_05|'''Homology I: the principles''']] (Boris,  Monday, Sept. 24)
 
−
<li>[[Lecture_06|'''Homology II: Sequence Alignment''']] (Boris,  Thursday, Sept. 27)
 
−
<li>[[Lecture_07|'''Homology III: Multiple Sequence Alignment''']] (Boris,  Monday, Oct. 1)
 
−
<li>[[Lecture_08|'''Homology IV: Fast Sequence Database searches''']] (Boris,  Thursday, Oct. 4)
 
−
</ol>
 
−
 
 
−
 
 
−
;Structures
 
−
<ol  start="9">
 
−
<li>[[Lecture_09|'''Protein Structure Databases''']] (Boris,  Thursday, Oct. 11)
 
−
<li>[[Lecture_10|'''Interpreting Protein Structure''']] (Boris,  Monday, Oct. 15'''*''')
 
−
<div style="color: #AAAAAA;">
 
−
<li>[[Lecture_11|Structural Domains]] (Boris,  Monday, Oct. 15'''*''')
 
−
<li>[[Lecture_12|Homology Modeling + Protein Structure Prediction]]  (Boris,  Thursday, Oct. 18)
 
 
</div>
 
</div>
−
</ol>
 
  
−
<p>
+
&nbsp;<br/>
−
<small>('''*''') Double lecture (12:00 - 14:00) to make up for Thanksgiving, Oct 8.</small>
 
  
−
;Genomes
 
−
<ol  start="13">
 
−
<li>[[Lecture_13|'''Genome Sequencing''']] (John,  Monday, Oct. 22)
 
−
<li>[[Lecture_14|'''Genomes''']] (John,  Thursday, Oct. 25)
 
−
<li>[[Lecture_15|'''Comparative Genomics''']] (John,  Monday, Oct. 29)
 
−
<div style="color: #AAAAAA;">
 
−
<li>[[Lecture_16|Phylogenetic Analysis]] (Boris,  Thursday, Nov. 1)
 
 
</div>
 
</div>
−
</ol>
 
−
 
−
;Systems
 
−
<ol  start="17">
 
−
<li>[[Lecture_17|'''Functional Annotation''']] (Shoshana,  Monday, Nov. 5)
 
−
<div style="color: #AAAAAA;">
 
−
<li>[[Lecture_18|Human Population Genomics]] (Boris, Nov. 8)
 
−
<li>[[Lecture_19|Proteomics]] (Boris,  Monday, Nov. 12)
 
−
</div>
 
−
<li>[[Lecture_20|'''Gene regulation I''']] (Shoshana,  Thursday, Nov. 15)
 
−
<li>[[Lecture_21|'''Gene regulation II''']] (Shoshana,  Monday, Nov. 19)
 
−
<div style="color: #AAAAAA;">
 
−
<li>[[Lecture_22|Microarray Expression Analysis]] ([http://hugheslab.ccbr.utoronto.ca/ Tim Hughes],  Thursday, Nov. 22)
 
 
</div>
 
</div>
−
<li>[[Lecture_23|'''Pathways and Networks''']] ([http://baderlab.org/ Gary Bader], Monday, Nov. 26)
 
−
<li>[[Lecture_24|'''Interaction Databases''']] (Francis Ouelette, OICR, Thursday, Nov. 29)
 
−
<li>[[Lecture_25|'''Metabolic Networks''']] (Shoshana,  Monday, Dec. 3)
 
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<li>[[Lecture_26|'''Computational Systems Biology''']] (John,  Thursday, Dec. 7)
 
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</ol>
 
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-->
 
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<div style="padding: 5px; background: #FFDD33;  border:solid 3px #000000; font-size:150%;font-weight:bold;">
 
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Ongoing construction <br>
 
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<small>Don't trust information below.</small>
 
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</div>
 
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== Assignments ==
 
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&nbsp;
 
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&nbsp;
 
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<table border="0" cellpadding="5">
 
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<tr>
 
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<td>[[Assignment_1|'''First Assignment''']]</td>
 
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<td>Databases and Molecular Models</td>
 
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<td>''posted Sept. 13, due Oct. 1.''</td>
 
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</tr>
 
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<tr>
 
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<td>[[Assignment_2|'''Second Assignment''']]</td>
 
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<td>Search, Retrieve and Annotate</td>
 
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<td>''posted Sept. 24, due Oct. 9.''</td>
 
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</tr>
 
−
 
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<tr>
 
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<td>[[Assignment_3|'''Third Assignment''']]</td>
 
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<td>Multiple Sequence Alignment</td>
 
−
<td>posted Oct. 10, due Oct. 22.</td>
 
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</tr>
 
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<tr>
 
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<td>[[Assignment_4|'''Fourth Assignment''']]</td>
 
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<td>Homology Modeling</td>
 
−
<td>posted Nov. 1, due Nov. 12.</td>
 
−
</tr>
 
−
 
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<tr>
 
−
<td>[[Assignment_5|'''Fifth Assignment''']]</td>
 
−
<td>Phylogenetic Analysis</td>
 
−
<td>posted Nov. 28, due Dec. 7.''</td>
 
−
</tr>
 
−
 
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<tr>
 
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<td>[[Assignment_6|'''Sixth Assignment''']]</td>
 
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<td>Systems</td>
 
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<td>posted Dec. 4, due Dec. 7 (last day of class)</td>
 
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</tr>
 
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</table>
 
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&nbsp;
 
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==In depth...==
 
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* [[Glossary]]
 
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* [[Mutation Data Matrices]]
 
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<!-- * [[Database Identifiers]] -->
 
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&nbsp;
 
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== Resources ==
 
−
;Course related
 
−
*The [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web site].
 
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*The [http://groups.google.com/group/bch441_2007 Course Google Group].
 
−
*[[Netiquette]] for the Group mailing list
 
−
*Previous [[Exam_questions]]
 
−
&nbsp;<br>
 
−
;Contents related
 
−
*A '''[[Stereo Vision]]''' tutorial
 
−
*[http://biodatabase.org/index.php/Main_Page MetaDatabase]
 
−
*[http://nar.oxfordjournals.org/content/vol35/suppl_1/index.dtl NAR January-2007 '''Database''' issue]
 
−
*[http://nar.oxfordjournals.org/content/vol35/suppl_2/index.dtl NAR July-2007 '''Web server''' issue]
 
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&nbsp;<br>
 
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−
 
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<!--
 
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;Course Wiki
 
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*[[Help:Introduction|Introduction:]] Concept and contents of the Course Wiki
 
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*[[Soapbox]]: A page to commmunicate. Do you want to leave a message? Alert the course members? Voice an opinion? Praise or flame? Use this page.
 
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*[[Help:Editing| Editing:]] Editing principles and Wiki markup syntax for the Course Wiki pages
 
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*[[Sandbox]]: A page for your editing experiments. Content added to this page will not stay permanently.
 
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*[[Feedback]]: Share your views on the course, suggest improvements.
 
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-->
 
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&nbsp;<br>
 
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<!--- Color schemes
 
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<div style="padding: 3px; background: #457DB5;  border:solid 1px #AAAAAA;">Level 1</div>
 
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&nbsp;
 
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<div style="padding: 3px; background: #6F9BD0;  border:solid 1px #AAAAAA;">Level 2</div>
 
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&nbsp;
 
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<div style="padding: 3px; background: #9CC86F;  border:solid 1px #AAAAAA;">Level 3</div>
 
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&nbsp;
 
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<div style="padding: 3px; background: #F0F07A;  border:solid 1px #AAAAAA;">Alert</div>
 
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&nbsp;
 
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<div style="padding: 3px; background: #FF4560;  border:solid 1px #AAAAAA;">Warning!</div>
 
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&nbsp;
 
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--->
 

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